Perfect Simulation from Nonneutral Population Genetics Models

Single Locus Models

These programs allow simulation from the stationary distribution of population genetic models with selection, using the ancestral selection graph. There are two programs, hap which copes with haploid (or genic) selection, and dip which copes with diploid selection.

I am currently working on a new version of these programs: simulation of sequence data, with recombination and selection. If you are interested in this please let me know.

• Archived, compressed version (to be compiled with gcc):
  hap.tar
  dip.tar
  To extract after down loading type:
  
  tar -xvf file.tar
  
  
• Executable version (DOS/Windows):
  hap.zip
  dip.zip
  
  After downloading the file you need to unzip it. This can be done by typing :
  
  unzip file.zip
  
  Details for running the program are given in the relevant README files.
  
  If you have any problems downloading, or unzipping these programs, Email p.fearnhead@lancaster.ac.uk.

Unlinked-Loci: Models from Complex diseases

• Archived, compressed version (to be compiled with gcc):
  hap.tar
  
  After downloading the file you need to unzip it. This can be done by typing :
  
  tar -xvf CSG.tar
  
  Details for running the program are given in the relevant README files.
  

Last update:30 July 2004.